7YH9
Crystal structure of IMP-1 MBL in complex with 3-(4-benzyl-1H-1,2,3-triazol-1-yl)phthalic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 195 |
Detector technology | PIXEL |
Collection date | 2020-07-05 |
Detector | DECTRIS PILATUS3 X CdTe 1M |
Wavelength(s) | 1 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 111.454, 173.143, 97.447 |
Unit cell angles | 90.00, 123.88, 90.00 |
Refinement procedure
Resolution | 48.970 - 2.390 |
R-factor | 0.1889 |
Rwork | 0.187 |
R-free | 0.23480 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1ddk |
RMSD bond length | 0.021 |
RMSD bond angle | 0.942 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER (2.6.0) |
Refinement software | PHENIX (1.10.1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.460 |
High resolution limit [Å] | 2.390 | 5.920 | 2.400 |
Rmerge | 0.130 | 0.065 | 0.988 |
Rmeas | 0.140 | 0.070 | 1.066 |
Rpim | 0.051 | 0.026 | 0.396 |
Number of reflections | 58118 | 3890 | 3856 |
<I/σ(I)> | 4.6 | ||
Completeness [%] | 96.4 | 95.2 | 96.1 |
Redundancy | 7.2 | 7.3 | 6.9 |
CC(1/2) | 0.995 | 0.671 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.1 M sodium acetate pH 4.5, 20-28% PEG8000, 0.2 M lithium sulfate |