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7YD3

Single-chain variable fragment of app 3D1 antibody

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL19U1
Synchrotron siteSSRF
BeamlineBL19U1
Temperature [K]77
Detector technologyCCD
Collection date2021-10-04
DetectorMAR CCD 130 mm
Wavelength(s)0.9785
Spacegroup nameP 1
Unit cell lengths47.183, 70.490, 74.815
Unit cell angles108.83, 93.82, 90.09
Refinement procedure
Resolution19.920 - 2.160
R-factor0.219
Rwork0.217
R-free0.25370
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6kvf
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]19.9202.240
High resolution limit [Å]2.1602.160
Number of reflections15575245947
<I/σ(I)>7.6
Completeness [%]94.4
Redundancy3.4
CC(1/2)0.9100.850
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP29310% 2-propanol, 0.1 M HEPES pH 7.5, 20% PEG 4000

247536

PDB entries from 2026-01-14

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