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7YBC

Aspartyl/Asparaginyl beta-hydroxylase (AspH) oxygenase and TPR domains in complex with (S)-4-hydroxy-4-methyl-2-oxoglutarate and factor X-derived peptide (39mer-4Ser)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I24
Synchrotron siteDiamond
BeamlineI24
Temperature [K]100
Detector technologyPIXEL
Collection date2020-07-09
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.99990
Spacegroup nameP 21 21 21
Unit cell lengths50.372, 87.049, 124.396
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution43.600 - 1.840
R-factor0.1786
Rwork0.178
R-free0.19870
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5jtc
RMSD bond length0.005
RMSD bond angle0.786
Data reduction softwareautoPROC
Data scaling softwareautoPROC
Phasing softwarePHASER
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]71.3201.870
High resolution limit [Å]1.8401.840
Rmerge0.2794.176
Rmeas0.2904.345
Rpim0.0811.195
Number of reflections484172389
<I/σ(I)>8.50.9
Completeness [%]100.0100
Redundancy12.913.2
CC(1/2)0.9940.399
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.52770.2 M Sodium acetate trihydrate, 20 % w/v Polyethylene glycol 3,350, 0.1 M Bis Tris propane

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PDB entries from 2024-06-26

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