7X4O

Crystal structure of Vps17p PX from S. cerevisiae (Space)

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	SPRING-8 BEAMLINE BL12B2
Synchrotron site	SPring-8
Beamline	BL12B2
Temperature [K]	100
Detector technology	CCD
Collection date	2004-11-28
Detector	ADSC QUANTUM 4
Wavelength(s)	1.000
Spacegroup name	P 21 3
Unit cell lengths	100.280, 100.280, 100.280
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	44.850 - 2.020
R-factor	0.2024
Rwork	0.200
R-free	0.25160
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	AlphaFold2
RMSD bond length	0.008
RMSD bond angle	0.907
Data reduction software	iMOSFLM (v7.2.2)
Data scaling software	Aimless (v0.7.7)
Phasing software	MOLREP (v11.7.3)
Refinement software	PHENIX (1.18.2_3874)

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	44.850	2.070
High resolution limit [Å]	2.020	2.020
Rmerge	0.088	0.909
Rmeas	0.124
Rpim	0.088	0.561
Number of reflections	22287	1603
<I/σ(I)>	7.4	1.5
Completeness [%]	97.7	99.6
Redundancy	1.9	3.5
CC(1/2)	0.992	0.548

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	COUNTER-DIFFUSION	7.5	293	1.5M lithium sulfate, 0.1 M HEPES-Na, under a microgravity environment