7WD1
Crystal structure of R14 bound to SARS-CoV-2 RBD
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 291 |
Detector technology | PIXEL |
Collection date | 2021-07-02 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.97852 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 92.450, 92.450, 218.745 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 46.220 - 2.500 |
R-factor | 0.2025 |
Rwork | 0.201 |
R-free | 0.23950 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6lzg |
RMSD bond length | 0.003 |
RMSD bond angle | 0.640 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.590 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmerge | 0.180 | 1.135 |
Number of reflections | 38373 | 3747 |
<I/σ(I)> | 14.229 | |
Completeness [%] | 100.0 | |
Redundancy | 13.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.10% w/v n-Octyl-b-D-glucoside, 0.1M Sodium citrate tribasic dihydrate (pH 5.5), 22% w/v Polyethylene glycol 3350 |