7VPU
Crystal structure of the ligand-binding domain of L. thermotolerans Upc2 in complex with ergosterol
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 7A (6B, 6C1) |
Synchrotron site | PAL/PLS |
Beamline | 7A (6B, 6C1) |
Temperature [K] | 110 |
Detector technology | CCD |
Collection date | 2015-03-28 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 0.97934 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 64.379, 147.127, 90.948 |
Unit cell angles | 90.00, 108.33, 90.00 |
Refinement procedure
Resolution | 24.310 - 2.590 |
R-factor | 0.2314 |
Rwork | 0.229 |
R-free | 0.27880 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4n9n |
RMSD bond length | 0.012 |
RMSD bond angle | 2.139 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.640 |
High resolution limit [Å] | 2.590 | 2.600 |
Rmerge | 0.072 | 0.535 |
Number of reflections | 49148 | 2446 |
<I/σ(I)> | 33 | 3.9 |
Completeness [%] | 99.1 | 100 |
Redundancy | 4.3 | 4.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4 | 296 | 0.1 M Na-Acetate pH 4.0, 15% PEG 20000, 0.2 M NaNO3 |