Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7VGC

Crystal structure of prolyl oligopeptidase from Microbulbifer arenaceous complex with a transition state analog inhibitor ZPR

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL17B1
Synchrotron siteSSRF
BeamlineBL17B1
Temperature [K]100
Detector technologyPIXEL
Collection date2021-06-27
DetectorDECTRIS PILATUS3 S 2M
Wavelength(s)0.979
Spacegroup nameP 1 21 1
Unit cell lengths62.108, 65.622, 91.765
Unit cell angles90.00, 105.29, 90.00
Refinement procedure
Resolution30.960 - 2.722
Rwork0.195
R-free0.27080
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7vgb
RMSD bond length0.004
RMSD bond angle1.242
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0267)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.9602.820
High resolution limit [Å]2.7222.722
Number of reflections186206850
<I/σ(I)>5.75
Completeness [%]96.3
Redundancy5.1
CC(1/2)0.9240.924
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2770.04M MES monohydrate pH 6.0, 8.8% (v/v) Polyethylene glycol 400

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon