7VGC
Crystal structure of prolyl oligopeptidase from Microbulbifer arenaceous complex with a transition state analog inhibitor ZPR
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17B1 |
Synchrotron site | SSRF |
Beamline | BL17B1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-06-27 |
Detector | DECTRIS PILATUS3 S 2M |
Wavelength(s) | 0.979 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 62.108, 65.622, 91.765 |
Unit cell angles | 90.00, 105.29, 90.00 |
Refinement procedure
Resolution | 30.960 - 2.722 |
Rwork | 0.195 |
R-free | 0.27080 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7vgb |
RMSD bond length | 0.004 |
RMSD bond angle | 1.242 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.960 | 2.820 |
High resolution limit [Å] | 2.722 | 2.722 |
Number of reflections | 18620 | 6850 |
<I/σ(I)> | 5.75 | |
Completeness [%] | 96.3 | |
Redundancy | 5.1 | |
CC(1/2) | 0.924 | 0.924 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 0.04M MES monohydrate pH 6.0, 8.8% (v/v) Polyethylene glycol 400 |