7UF7
Crystal structure of liganded Hb with the 5-HMF analog, MMA503
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-12-15 |
Detector | DECTRIS EIGER R 4M |
Wavelength(s) | 1.5406 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 62.614, 83.120, 105.122 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.222 - 2.000 |
R-factor | 0.1606 |
Rwork | 0.157 |
R-free | 0.22300 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3ic0 |
RMSD bond length | 0.007 |
RMSD bond angle | 0.858 |
Data reduction software | CrysalisPro (41.64.69a) |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 28.222 | 28.220 | 2.050 |
High resolution limit [Å] | 2.000 | 8.940 | 2.000 |
Rmerge | 0.045 | 0.024 | 0.226 |
Rmeas | 0.049 | 0.026 | 0.248 |
Rpim | 0.019 | 0.010 | 0.101 |
Total number of observations | 2588 | 16066 | |
Number of reflections | 37792 | 463 | 2722 |
<I/σ(I)> | 30.2 | 84 | 8.9 |
Completeness [%] | 99.9 | 95 | 100 |
Redundancy | 6.3 | 5.6 | 5.9 |
CC(1/2) | 0.999 | 0.999 | 0.975 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.4 | 293 | 30 mg/dL of CO-ligated Hb crystallized using 10-20% PEG 6000, 100 mM Hepes, pH 7.4 |