7TU4
Structure of the L. blandensis dGTPase del55-58 mutant bound to Mn
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-11-15 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 181.397, 181.397, 110.369 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.560 - 2.260 |
R-factor | 0.1984 |
Rwork | 0.198 |
R-free | 0.22840 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3bg2 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.042 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.560 | 2.390 |
High resolution limit [Å] | 2.260 | 2.260 |
Rmerge | 0.161 | 1.037 |
Rmeas | 0.169 | 1.092 |
Number of reflections | 86058 | 13304 |
<I/σ(I)> | 7.56 | 1.02 |
Completeness [%] | 99.3 | 96.5 |
Redundancy | 11 | 10.1 |
CC(1/2) | 0.995 | 0.782 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | Crystal grown in 1ul:1ul drops of well solution (0.6M Sodium Potassium Tartrate, 0.2M Lithium Sulfate, 0.1M Bis-Tris pH 6.5) and 10mg/mL protein. Cryoprotected by soaking in well solution with 30% ethylene glycol and 10mM MnCl2 added |