7TKY
Crystal structure of D94A human Galectin-7 mutant
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08B1-1 |
Synchrotron site | CLSI |
Beamline | 08B1-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-02-19 |
Detector | RAYONIX MX300HE |
Wavelength(s) | 1.0332 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 53.970, 66.830, 69.490 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.170 - 2.530 |
R-factor | 0.2317 |
Rwork | 0.226 |
R-free | 0.28320 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1bkz |
RMSD bond length | 0.007 |
RMSD bond angle | 1.032 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER (2.7.12) |
Refinement software | PHENIX (1.19.2) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.180 | 48.180 | 2.620 |
High resolution limit [Å] | 2.530 | 5.450 | 2.530 |
Rmerge | 0.179 | 0.055 | 1.370 |
Rmeas | 0.189 | 0.059 | 1.446 |
Rpim | 0.061 | 0.019 | 0.459 |
Number of reflections | 8822 | 961 | 858 |
<I/σ(I)> | 11.9 | 28.9 | 1.9 |
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 9.6 | 8.7 | 9.8 |
CC(1/2) | 0.997 | 0.999 | 0.623 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295.15 | 0.1 M NaCl, 0.1 M Tris pH 8, 20 % PEG 6000, 15% Glycerol |