7T9Q
Crystal structure of Crocodile defensin CpoBD13
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-03-02 |
Detector | DECTRIS EIGER2 S 16M |
Wavelength(s) | 0.9537 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 46.700, 56.425, 33.102 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.080 - 1.800 |
R-factor | 0.2283 |
Rwork | 0.227 |
R-free | 0.25310 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6cs9 |
RMSD bond length | 0.011 |
RMSD bond angle | 1.181 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2_3874+SVN) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 19.080 | 1.850 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.085 | 0.521 |
Number of reflections | 4157 | 308 |
<I/σ(I)> | 4.2 | 1.1 |
Completeness [%] | 98.0 | 99.3 |
Redundancy | 2.7 | 2.8 |
CC(1/2) | 0.995 | 0.461 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 0.1 M trisodium citrate pH 5.5, 20 % PEG 3K |