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7T93

Crystal Structure of Fumarate hydratase class II from Mycobacterium ulcerans in complex with L-Malate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-F
Synchrotron siteAPS
Beamline21-ID-F
Temperature [K]100
Detector technologyCCD
Collection date2021-09-23
DetectorRAYONIX MX-300
Wavelength(s)0.97872
Spacegroup nameP 21 21 21
Unit cell lengths98.040, 120.820, 158.780
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.480 - 1.650
R-factor0.1378
Rwork0.138
R-free0.16070
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3qbp
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMoRDa
Refinement softwarePHENIX (1.20-4438)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]48.48048.4801.690
High resolution limit [Å]1.6507.3801.650
Rmerge0.1090.0450.553
Rmeas0.1180.0500.602
Total number of observations1402855
Number of reflections225586273716540
<I/σ(I)>11.9128.243.25
Completeness [%]99.998.899.6
Redundancy6.2195.7136.203
CC(1/2)0.9980.9980.898
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5287[Protein: MyulA.01507.a.A1.PW29760 25mg/mL] [Barcode: 321232f4] [Collection: aps21idf 9/23/21] [Crystallization conditions: Molecular Dimensions Morpheus sparse matrix screen, condition F4: 0.1M MES/Imidazole pH 6.5, 12.5%(w/v) PEG 1000, 12.5%(w/v) PEG 3350, 12.5%(v/v) MPD, 0.02M each of (D-glucose, D-mannose, D-galactose, L-fucose, D-xylose, N-acetyl-D-glusosamine)] [Cryo: Direct]

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PDB entries from 2024-09-11

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