7SUV
APE1 exonuclease substrate complex with 8oxoG opposite A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-07-10 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.54 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 71.112, 66.486, 91.983 |
Unit cell angles | 90.00, 110.69, 90.00 |
Refinement procedure
Resolution | 24.960 - 1.990 |
R-factor | 0.2274 |
Rwork | 0.226 |
R-free | 0.26490 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5dfi |
RMSD bond length | 0.008 |
RMSD bond angle | 1.011 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX (1.19.2_4158) |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.000 | 2.030 |
High resolution limit [Å] | 1.990 | 2.000 |
Rmeas | 0.145 | 0.674 |
Rpim | 0.063 | 0.404 |
Number of reflections | 96631 | 189625 |
<I/σ(I)> | 15.04 | 1.71 |
Completeness [%] | 98.6 | 96.9 |
Redundancy | 3.7 | 2.5 |
CC(1/2) | 0.829 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 293.15 | 7 - 14% PEG20000, 100 mM sodium citrate, 15% glycerol, 5 mM calcium chloride |