7SSH
Single chain trimer HLA-A*02:01 (Y108A) with HPV.16 E7 peptide YMLDLQPETTDLYC
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 93 |
Detector technology | PIXEL |
Collection date | 2021-08-13 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1 |
Spacegroup name | P 1 |
Unit cell lengths | 117.681, 118.924, 274.991 |
Unit cell angles | 77.60, 77.60, 89.95 |
Refinement procedure
Resolution | 49.190 - 2.730 |
R-factor | 0.2552 |
Rwork | 0.253 |
R-free | 0.29420 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7sqp |
RMSD bond length | 0.004 |
RMSD bond angle | 0.524 |
Refinement software | PHENIX (1.19.1_4122) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.830 |
High resolution limit [Å] | 2.730 | 2.730 |
Number of reflections | 331873 | 28511 |
<I/σ(I)> | 15.9 | 2.33 |
Completeness [%] | 89.7 | |
Redundancy | 2.3 | |
CC(1/2) | 0.986 | 0.510 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | 200 mM NaCl, 100 mM HEPES, pH 7.0, 1.45 M (NH4)2SO4 |