7SEO
Crystal Structure of Caspase-3 with Peptide Inhibitor Ac-VDV(DAB)D-CHO
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2021-07-17 |
Detector | DECTRIS EIGER2 X 9M |
Wavelength(s) | 1 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 50.464, 66.127, 83.468 |
Unit cell angles | 90.00, 90.87, 90.00 |
Refinement procedure
Resolution | 19.900 - 3.250 |
R-factor | 0.1928 |
Rwork | 0.189 |
R-free | 0.26320 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2h65 |
Data reduction software | autoPROC |
Data scaling software | Aimless (0.7.4) |
Phasing software | REFMAC |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 83.460 | 83.460 | 3.430 |
High resolution limit [Å] | 3.250 | 10.280 | 3.250 |
Rmerge | 0.096 | 0.035 | 0.207 |
Rmeas | 0.122 | 0.045 | 0.261 |
Rpim | 0.074 | 0.028 | 0.156 |
Total number of observations | 19027 | 638 | 2359 |
Number of reflections | 8215 | 282 | 1076 |
<I/σ(I)> | 5.2 | 8.8 | 3.3 |
Completeness [%] | 93.4 | 94.9 | 84.3 |
Redundancy | 2.3 | 2.3 | 2.2 |
CC(1/2) | 0.990 | 0.997 | 0.942 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.3 | 293 | 15% PEG 6000, 5% Glycerol, 100mM Sodium Citrate (pH 5.3), 10mM DTT, 3mM NaN3 |