7SA7
Crystal structure of the apo SH2 domains of Syk
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.2 |
Synchrotron site | ALS |
Beamline | 8.2.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-12-09 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.999816 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 143.882, 153.881, 85.472 |
Unit cell angles | 90.00, 91.05, 90.00 |
Refinement procedure
Resolution | 45.780 - 3.200 |
R-factor | 0.2711 |
Rwork | 0.270 |
R-free | 0.30390 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1a81 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.661 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.18.2_3874: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.780 | 3.314 |
High resolution limit [Å] | 3.200 | 3.200 |
Rmerge | 0.323 | 2.097 |
Number of reflections | 30660 | 3029 |
<I/σ(I)> | 7.47 | |
Completeness [%] | 99.7 | |
Redundancy | 8.3 | |
CC(1/2) | 0.988 | 0.842 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293 | Protein- 35mg/mL in 10mM HEPES pH 7.0, 50mM NaCl, 5% glycerol and 1mM TCEP Crystal conditions-0.2M sodium nitrate and 10% w/v PEG 3350 Cryoprotectant-0.2M sodium nitrate, 20% PEG 3350, and 20% glycerol |