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7S4T

Crystal structure of CDK2 liganded with compound EF2252

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]93
Detector technologyCCD
Collection date2019-06-26
DetectorRIGAKU SATURN 944+
Wavelength(s)1
Spacegroup nameP 21 21 21
Unit cell lengths51.047, 71.515, 72.431
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution41.550 - 1.910
R-factor0.1765
Rwork0.174
R-free0.21850
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4kd1
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.18.2-3874_3874)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.940
High resolution limit [Å]1.9105.1801.910
Rmerge0.0490.0350.150
Rmeas0.0530.0380.165
Rpim0.0200.0150.068
Total number of observations148683
Number of reflections2126911721036
<I/σ(I)>15.3
Completeness [%]100.099.8100
Redundancy76.55.7
CC(1/2)0.9990.984
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2914.5mg/mL CDK2,1mM EF2252 soaking 48hours at 0.1M Hepes Na, pH7.5, 10%(v/v)PEG3350

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