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7RY7

Structure of Plasmepsin X (PM10, PMX) from Plasmodium falciparum 3D7

Replaces:  6ORS
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-F
Synchrotron siteAPS
Beamline21-ID-F
Temperature [K]100
Detector technologyCCD
Collection date2019-04-18
DetectorRAYONIX MX-300
Wavelength(s)0.97872
Spacegroup nameC 1 2 1
Unit cell lengths192.300, 50.880, 49.920
Unit cell angles90.00, 93.15, 90.00
Refinement procedure
Resolution35.260 - 2.100
R-factor0.2084
Rwork0.206
R-free0.23830
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3psg
RMSD bond length0.006
RMSD bond angle0.800
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMR-Rosetta
Refinement softwarePHENIX (1.19 dev 4329)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.150
High resolution limit [Å]2.1009.3902.100
Rmerge0.0460.0201.204
Rmeas0.0530.0241.410
Number of reflections283813412079
<I/σ(I)>15.452.061.11
Completeness [%]99.896.699.6
Redundancy3.953.4433.589
CC(1/2)0.9990.9980.654
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP9.4290RigakuReagents JCSG A7 optimization screen: 100mM Tris HCl / NaOH pH 9.4, 17.86% PEG 8000: PlfaA.17789.b.HE11.PD38363 at 11.4mg/ml: cryo: 20% EG: tray: 3908603 D3: puck qpu2-2

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