7RL8
Crystal Structure of C79A Mutant of Class D beta-lactamase from Clostridium difficile 630
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-G |
Synchrotron site | APS |
Beamline | 21-ID-G |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2020-02-14 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.97856 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 86.118, 93.878, 138.346 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.840 - 1.950 |
R-factor | 0.1793 |
Rwork | 0.178 |
R-free | 0.20660 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ue2 |
RMSD bond length | 0.004 |
RMSD bond angle | 1.242 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 1.980 |
High resolution limit [Å] | 1.950 | 1.950 |
Rmerge | 0.074 | 0.722 |
Rmeas | 0.080 | 0.776 |
Rpim | 0.030 | 0.283 |
Number of reflections | 82125 | 4066 |
<I/σ(I)> | 25.1 | 2.9 |
Completeness [%] | 100.0 | 100 |
Redundancy | 7.4 | 7.4 |
CC(1/2) | 0.844 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 292 | Protein: 7.2 mg/ml, 0.01M Tris pH 8.3, 5mM DDT; Screen: PACT (D4), 0.1M MMT buffer pH 7.0, 25% (w/v) PEG 1500 |