Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

7RL8

Crystal Structure of C79A Mutant of Class D beta-lactamase from Clostridium difficile 630

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-G
Synchrotron siteAPS
Beamline21-ID-G
Temperature [K]100
Detector technologyCCD
Collection date2020-02-14
DetectorMARMOSAIC 300 mm CCD
Wavelength(s)0.97856
Spacegroup nameP 21 21 21
Unit cell lengths86.118, 93.878, 138.346
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution29.840 - 1.950
R-factor0.1793
Rwork0.178
R-free0.20660
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6ue2
RMSD bond length0.004
RMSD bond angle1.242
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0001.980
High resolution limit [Å]1.9501.950
Rmerge0.0740.722
Rmeas0.0800.776
Rpim0.0300.283
Number of reflections821254066
<I/σ(I)>25.12.9
Completeness [%]100.0100
Redundancy7.47.4
CC(1/2)0.844
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7292Protein: 7.2 mg/ml, 0.01M Tris pH 8.3, 5mM DDT; Screen: PACT (D4), 0.1M MMT buffer pH 7.0, 25% (w/v) PEG 1500

229380

PDB entries from 2024-12-25

PDB statisticsPDBj update infoContact PDBjnumon