7R9G
Catalytically inactive yeast Pseudouridine Synthase, PUS1, bound to RNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.1 |
Synchrotron site | ALS |
Beamline | 5.0.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-02-20 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.977 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 104.195, 98.344, 72.239 |
Unit cell angles | 90.00, 102.80, 90.00 |
Refinement procedure
Resolution | 49.170 - 2.400 |
R-factor | 0.2247 |
Rwork | 0.222 |
R-free | 0.26400 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4j37 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.509 |
Data scaling software | HKL-2000 |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.18) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.440 |
High resolution limit [Å] | 2.400 | 6.510 | 2.400 |
Rmerge | 0.072 | 0.041 | 0.632 |
Rmeas | 0.078 | 0.044 | 0.698 |
Rpim | 0.030 | 0.017 | 0.291 |
Total number of observations | 178541 | ||
Number of reflections | 27638 | 1421 | 1300 |
<I/σ(I)> | 8 | ||
Completeness [%] | 99.6 | 100 | 95.1 |
Redundancy | 6.5 | 6.5 | 5.3 |
CC(1/2) | 0.998 | 0.813 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 277 | 0.05 M Ammonium sulfate, 0.05 M Bis-Tris pH 6.0, 26% Pentaerythritol ethoxylate |