7QLB
SMYD3 in complex with fragment FL06268
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-06-25 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.97628 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 60.938, 66.329, 108.165 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.330 - 1.800 |
R-factor | 0.1519 |
Rwork | 0.150 |
R-free | 0.18330 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6z2r |
RMSD bond length | 0.009 |
RMSD bond angle | 0.963 |
Data scaling software | Aimless (0.7.4) |
Refinement software | PHENIX (1.20rc4_4425) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.330 | 1.864 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.019 | 0.144 |
Rmeas | 0.027 | 0.204 |
Number of reflections | 82041 | 7484 |
<I/σ(I)> | 24.1 | 4.87 |
Completeness [%] | 99.2 | 93.17 |
Redundancy | 2 | 2 |
CC(1/2) | 0.999 | 0.950 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 0.1 M Tris pH 8.25-8.75 0.1M Magnesium acetate 15-18 % PEG 3350 |