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7QIE

Crystal Structure of Phosphatidylinositol 5-Phosphate 4-Kinase (PI5P4K2C) bound to an allosteric inhibitor

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyPIXEL
Collection date2018-11-30
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)0.97625
Spacegroup nameP 1 21 1
Unit cell lengths49.414, 114.794, 146.853
Unit cell angles90.00, 95.51, 90.00
Refinement procedure
Resolution146.170 - 2.390
R-factor0.2137
Rwork0.211
R-free0.26570
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2gk9
RMSD bond length0.010
RMSD bond angle1.600
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0267)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]146.1702.460
High resolution limit [Å]2.3902.390
Number of reflections3670583
<I/σ(I)>4.7
Completeness [%]72.6
Redundancy3.7
CC(1/2)0.8390.359
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP29322% w/v Peg3350, 0.3 M Ammonium Tartrate, 100mM PCPT pH 7.5

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PDB entries from 2024-08-07

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