7QGL
Human CD73 (ecto 5'-nucleotidase) in complex with MRS4602 (a 3-methyl-CMPCP derivative, compound 21 in paper) in the open state
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-09-16 |
Detector | RIGAKU HyPix-6000HE |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 66.856, 129.841, 65.797 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 21.630 - 1.500 |
R-factor | 0.1585 |
Rwork | 0.158 |
R-free | 0.17450 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 6tve |
RMSD bond length | 0.008 |
RMSD bond angle | 1.050 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | BUSTER |
Refinement software | BUSTER (2.10.4 (20-OCT-2021)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 21.630 | 21.630 | 1.530 |
High resolution limit [Å] | 1.500 | 8.220 | 1.500 |
Rmerge | 0.057 | 0.025 | 0.440 |
Rmeas | 0.065 | 0.027 | 0.541 |
Rpim | 0.031 | 0.010 | 0.310 |
Total number of observations | 362347 | 3887 | 12519 |
Number of reflections | 91996 | 611 | 4482 |
<I/σ(I)> | 14.8 | 52.3 | 2.3 |
Completeness [%] | 99.6 | 93.8 | 99.1 |
Redundancy | 3.9 | 6.4 | 2.8 |
CC(1/2) | 0.998 | 0.999 | 0.743 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.2 | 291 | 10 mM MRS4602, 100 microM ZnCl2, 8 % PEG 6.000, 0.1 M MES pH 6.2, 20 % PEG200 |