7QA0
Crystal structure of PqsR (MvfR) ligand-binding domain in complex with compound 1456
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-02-28 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.00004 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 109.131, 119.824, 114.033 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 54.570 - 2.670 |
R-factor | 0.2385 |
Rwork | 0.236 |
R-free | 0.28090 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2q7v |
RMSD bond length | 0.007 |
RMSD bond angle | 0.970 |
Data reduction software | autoPROC (20190301) |
Data scaling software | STARANISO |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 60.100 | 2.960 |
High resolution limit [Å] | 2.670 | 2.670 |
Rpim | 0.029 | 0.580 |
Number of reflections | 10949 | 547 |
<I/σ(I)> | 15.3 | 1.5 |
Completeness [%] | 93.3 | |
Redundancy | 12.9 | |
CC(1/2) | 1.000 | 0.430 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 1.5 M LiCl 125 mM MgAcet 0.1 M MES pH 6.6 Protein: 6.5 mg/ml Compound: 2 mM Cryoprotectant: 20% 2,3-butanediol |