7Q5V

HIF PROLYL HYDROXYLASE 2 (PHD2/EGLN1) IN COMPLEX WITH N-OXALYLGLYCINE (NOG) AND HIF-2 ALPHA CODD (523-542)

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	DIAMOND BEAMLINE I24
Synchrotron site	Diamond
Beamline	I24
Temperature [K]	100
Detector technology	PIXEL
Collection date	2019-02-09
Detector	DECTRIS PILATUS3 6M
Wavelength(s)	0.96861
Spacegroup name	P 21 21 2
Unit cell lengths	130.914, 38.322, 42.880
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	42.880 - 1.170
R-factor	0.158
Rwork	0.157
R-free	0.17920
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	3hqr
Data reduction software	xia2 (0.5.769)
Data scaling software	DIALS (1.12.5)
Phasing software	PHASER (2.8.2)
Refinement software	PHENIX (1.19.1_4122)

Data quality characteristics

	Overall	Inner shell	Outer shell
Low resolution limit [Å]	43.640	43.670	1.190
High resolution limit [Å]	1.170	3.170	1.170
Rmerge	0.147		3.871
Rmeas	0.150	0.070	4.269
Rpim	0.030	0.014	1.046
Number of reflections	73796	4004	3540
<I/σ(I)>	11.1	37.3	1.1
Completeness [%]	99.9	100	97.1
Redundancy	23.9	23.6	15.4
CC(1/2)	0.999		0.390

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, SITTING DROP	7.5	298	Sample: 1.0 mM PHD2, 1.2 mM MnCl2, 2.0 mM NOG, 2 mM 3C, 2-4 mM HIF-2alpha-CODD; Reservoir: 0.31 M Magnesium formate (range: 0.25-0.39 M), 16.6% w/v polyethylene glycol 3350 (range: 18-22%); Sitting drop (200 nl): protein-to-well ratio, 1:1; Cryo-protectant: 15% v/v dilution of reservoir with glycerol