7Q0G
Crystal structure of the receptor binding domain of SARS-CoV-2 beta variant spike glycoprotein in complex with Beta-49 and FI-3A Fabs
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-10-09 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.9763 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 89.292, 106.538, 215.611 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 107.810 - 1.820 |
R-factor | 0.1934 |
Rwork | 0.192 |
R-free | 0.22410 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7pqy |
RMSD bond length | 0.008 |
RMSD bond angle | 0.970 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | PHENIX (1.19_4092) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 108.000 | 2.049 |
High resolution limit [Å] | 1.823 | 1.823 |
Rmerge | 0.095 | |
Rpim | 0.027 | |
Number of reflections | 93868 | 4694 |
<I/σ(I)> | 18.3 | 1.9 |
Completeness [%] | 94.9 | |
Redundancy | 13.8 | |
CC(1/2) | 0.999 | 0.711 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2 M Potassium sodium tartrate tetrahydrate, 0.1 M BIS-TRIS pH 6.5, 10% w/v Polyethylene glycol 10,000 |