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7PS9

Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Iberdomide (CC-220)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X10SA
Synchrotron siteSLS
BeamlineX10SA
Temperature [K]100
Detector technologyPIXEL
Collection date2018-03-14
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)0.9999
Spacegroup nameP 21 21 21
Unit cell lengths56.001, 58.850, 88.583
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution34.760 - 1.800
R-factor0.1956
Rwork0.193
R-free0.24620
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4v2y
RMSD bond length0.008
RMSD bond angle1.546
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwareREFMAC
Refinement softwareREFMAC (5.8.0266)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]34.7601.910
High resolution limit [Å]1.8001.800
Rmerge0.1351.542
Rmeas0.1411.611
Number of reflections273184220
<I/σ(I)>11.241.21
Completeness [%]97.794.9
Redundancy12.511
CC(1/2)0.9980.845
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2930.5 M (NH4)H2PO4

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PDB entries from 2024-05-15

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