7PG6
Crystal Structure of PI3Kalpha in complex with the inhibitor NVP-BYL719
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-11-15 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97626 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 104.870, 105.190, 135.740 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.042 - 2.499 |
R-factor | 0.189921800655 |
Rwork | 0.187 |
R-free | 0.24032 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7pg5 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.261 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | MOLREP |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.650 |
High resolution limit [Å] | 2.499 | 2.499 |
Rmeas | 0.217 | |
Number of reflections | 52624 | 8343 |
<I/σ(I)> | 13.48 | |
Completeness [%] | 99.9 | 99.3 |
Redundancy | 13.4 | 13.7 |
CC(1/2) | 0.998 | 0.469 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | 10% PEG 5000, 160 mM KSCN and 100 mM sodium cacodylate pH 6.5 |