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7P7H

Crystal structure of Casein Kinase I delta (CK1d) with alphaG-in conformation

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06SA
Synchrotron siteSLS
BeamlineX06SA
Temperature [K]100
Detector technologyPIXEL
Collection date2021-07-04
DetectorDECTRIS EIGER2 X 16M
Wavelength(s)1.00002
Spacegroup nameP 1 21 1
Unit cell lengths49.029, 73.377, 90.608
Unit cell angles90.00, 103.64, 90.00
Refinement procedure
Resolution44.030 - 2.400
R-factor0.2251
Rwork0.223
R-free0.26840
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6ru7
RMSD bond length0.009
RMSD bond angle1.238
Data reduction softwareXDS
Data scaling softwareAimless (0.7.7)
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0267)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]44.03044.0302.530
High resolution limit [Å]2.4007.5902.400
Rmerge0.1690.0580.808
Rmeas0.2130.0651.021
Rpim0.0950.0270.455
Number of reflections230447343365
<I/σ(I)>71.7
Completeness [%]94.591.295
Redundancy4.75.14.5
CC(1/2)0.9800.9960.697
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.5277.1518% PEG 6000, 1 M LiCl and 0.1 M citrate, pH 5.5

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PDB entries from 2024-09-04

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