7P7H
Crystal structure of Casein Kinase I delta (CK1d) with alphaG-in conformation
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-07-04 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 1.00002 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 49.029, 73.377, 90.608 |
Unit cell angles | 90.00, 103.64, 90.00 |
Refinement procedure
Resolution | 44.030 - 2.400 |
R-factor | 0.2251 |
Rwork | 0.223 |
R-free | 0.26840 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ru7 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.238 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.7) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 44.030 | 44.030 | 2.530 |
High resolution limit [Å] | 2.400 | 7.590 | 2.400 |
Rmerge | 0.169 | 0.058 | 0.808 |
Rmeas | 0.213 | 0.065 | 1.021 |
Rpim | 0.095 | 0.027 | 0.455 |
Number of reflections | 23044 | 734 | 3365 |
<I/σ(I)> | 7 | 1.7 | |
Completeness [%] | 94.5 | 91.2 | 95 |
Redundancy | 4.7 | 5.1 | 4.5 |
CC(1/2) | 0.980 | 0.996 | 0.697 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 277.15 | 18% PEG 6000, 1 M LiCl and 0.1 M citrate, pH 5.5 |