7OW4
Crystal structure of HLA-A*11:01 in complex with KRAS G12D peptide (VVVGADGVGK)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-27 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9159 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 117.224, 121.432, 127.863 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 88.050 - 1.810 |
R-factor | 0.22111 |
Rwork | 0.220 |
R-free | 0.24917 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2hn7 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.482 |
Data reduction software | autoPROC |
Data scaling software | autoPROC |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 88.050 | 1.840 |
High resolution limit [Å] | 1.810 | 1.810 |
Rmerge | 0.260 | 4.611 |
Rmeas | 0.269 | 4.778 |
Rpim | 0.069 | 1.244 |
Number of reflections | 166212 | 8252 |
<I/σ(I)> | 8.7 | 0.7 |
Completeness [%] | 100.0 | 100 |
Redundancy | 15.1 | 14.5 |
CC(1/2) | 0.998 | 0.322 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2 M Lithium sulfate, 0.1 M Bis-Tris pH 5.5, 25% w/v PEG 3500 |