7OMR
Crystal structure of coelenteramide-bound Renilla reniformis luciferase RLuc8-D162A variant
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-02-07 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 0.9999 |
Spacegroup name | P 21 2 21 |
Unit cell lengths | 56.445, 74.166, 80.346 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.187 - 1.500 |
R-factor | 0.1714 |
Rwork | 0.171 |
R-free | 0.18610 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2psj |
Data reduction software | XDS |
Data scaling software | Aimless (0.6.2) |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2-4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.190 | 46.190 | 1.530 |
High resolution limit [Å] | 1.500 | 8.220 | 1.500 |
Rmerge | 0.090 | 0.024 | 2.141 |
Rmeas | 0.094 | 0.025 | 2.237 |
Rpim | 0.026 | 0.008 | 0.640 |
Total number of observations | 717310 | 4442 | 31214 |
Number of reflections | 54685 | 402 | 2626 |
<I/σ(I)> | 18.8 | 80.2 | 1.3 |
Completeness [%] | 99.9 | 99.7 | 97.6 |
Redundancy | 13.1 | 11 | 11.9 |
CC(1/2) | 1.000 | 1.000 | 0.561 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 293.15 | PEG8000, potassium phosphate, glycerol |