7OMD
Crystal structure of azacoelenterazine-bound Renilla reniformis luciferase variant RLuc8-D162A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-12-04 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 51.569, 84.057, 77.437 |
Unit cell angles | 90.00, 90.72, 90.00 |
Refinement procedure
Resolution | 38.401 - 1.601 |
R-factor | 0.1778 |
Rwork | 0.176 |
R-free | 0.21100 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2psj |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | PHENIX (1.14-3260-000) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 43.950 | 43.950 | 1.630 |
High resolution limit [Å] | 1.600 | 8.770 | 1.600 |
Rmerge | 0.054 | 0.020 | 1.057 |
Rmeas | 0.059 | 0.022 | 1.151 |
Rpim | 0.023 | 0.011 | 0.446 |
Total number of observations | 585268 | ||
Number of reflections | 86744 | 553 | 4170 |
<I/σ(I)> | 20 | ||
Completeness [%] | 99.8 | 98.7 | 97.3 |
Redundancy | 6.7 | 6.4 | 6.4 |
CC(1/2) | 0.998 | 0.988 | 0.674 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293.5 | PEG3350, Bis-tris |