7OFD
Keap1 kelch domain bound to a small molecule fragment
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-09-26 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.976246 |
Spacegroup name | P 61 |
Unit cell lengths | 103.013, 103.013, 55.031 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 51.510 - 1.250 |
R-factor | 0.1509 |
Rwork | 0.150 |
R-free | 0.17110 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5fnu |
RMSD bond length | 0.006 |
RMSD bond angle | 1.016 |
Data reduction software | XDS (v Jan 26, 2018) |
Data scaling software | Aimless (0.7.3) |
Phasing software | PHENIX (1.13_2998) |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 51.510 | 1.294 |
High resolution limit [Å] | 1.249 | 1.249 |
Rmerge | 0.061 | 0.598 |
Rmeas | 0.062 | 0.637 |
Rpim | 0.014 | 0.215 |
Number of reflections | 91534 | 8560 |
<I/σ(I)> | 24.73 | 2.45 |
Completeness [%] | 99.2 | 93.34 |
Redundancy | 18.2 | 8.6 |
CC(1/2) | 1.000 | 0.875 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.6 | 293 | 0.5 M Ammonium sulfate, 0.1 M Sodium citrate tribasic dihydrate pH 5.6 and 1.0 M Lithium sulfate monohydrate |