7NP9
Structure of the human CR3 - CD11bCD18 specific nanobody hCR3Nb1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-11-22 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.976300 |
Spacegroup name | I 41 2 2 |
Unit cell lengths | 82.781, 82.781, 72.456 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 54.520 - 1.140 |
R-factor | 0.1472 |
Rwork | 0.146 |
R-free | 0.16690 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ehg |
RMSD bond length | 0.010 |
RMSD bond angle | 1.163 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.19rc5_4047) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 54.520 | 1.181 |
High resolution limit [Å] | 1.140 | 1.140 |
Rmerge | 0.159 | |
Number of reflections | 44396 | 3194 |
<I/σ(I)> | 21.5 | |
Completeness [%] | 96.4 | |
Redundancy | 45 | |
CC(1/2) | 1.000 | 0.807 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 292 | 1.5 M AmSO4, 0.1 M BIS-TRIS pH 6.5 |