7N11
Crystal structure of the M. abscessus LeuRS editing domain in complex with epetraborole-AMP adduct
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-10-21 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.979 |
Spacegroup name | P 21 2 21 |
Unit cell lengths | 37.249, 51.597, 116.149 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.570 - 2.100 |
R-factor | 0.1882 |
Rwork | 0.184 |
R-free | 0.22580 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5agr |
RMSD bond length | 0.008 |
RMSD bond angle | 0.999 |
Data reduction software | HKL-2000 (v720) |
Data scaling software | HKL-2000 (v720) |
Phasing software | PHASER (1.15.2_3472) |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.720 |
High resolution limit [Å] | 1.690 | 1.690 |
Rmeas | 0.281 | 1.166 |
Rpim | 0.095 | 0.824 |
Number of reflections | 25482 | 66 |
<I/σ(I)> | 4.4 | |
Completeness [%] | 76.8 | |
Redundancy | 6.8 | 5.5 |
CC(1/2) | 0.974 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 2 ul of 10 mg/ml protein solution (50 mM Tris pH 7.5, 150 mM NaCl, 2 mM BME) were mixed with 2 ul of crystallization solution (100 mM HEPES pH 7.0, 2.5 M ammonium sulfate) |