7MZ8
Structure of human DNA polymerase beta complexed with 3-deaza-3-methyladenine (3dMeA) at N-1 of the template base paired with incoming dTTP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-12-17 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.0007 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 54.498, 78.827, 54.578 |
Unit cell angles | 90.00, 108.07, 90.00 |
Refinement procedure
Resolution | 19.707 - 2.600 |
R-factor | 0.2045 |
Rwork | 0.201 |
R-free | 0.26340 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1bpx |
RMSD bond length | 0.005 |
RMSD bond angle | 1.236 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | PHENIX (1.8.4_1496) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 20.000 | 10.000 | 2.670 |
High resolution limit [Å] | 2.600 | 7.010 | 2.620 |
Rmerge | 0.101 | 0.058 | 0.642 |
Number of reflections | 13461 | 700 | 645 |
<I/σ(I)> | 9.1 | ||
Completeness [%] | 99.7 | 99.6 | 99.7 |
Redundancy | 3.3 | 3.3 | 3.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 14% to 23% PEG3400, and 350 mM sodium acetate in 50 mM imidazole (pH 7.5) |