7MR8
Crystal structure of the first bromodomain (BD1) of human BRD4 bound to GXH-II-076
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-10-23 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 38.540, 39.990, 96.330 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.770 - 1.200 |
R-factor | 0.1665 |
Rwork | 0.166 |
R-free | 0.17750 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3mxf |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1-3660_3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.770 | 30.770 | 1.230 |
High resolution limit [Å] | 1.200 | 5.370 | 1.200 |
Rmerge | 0.040 | 0.033 | 0.172 |
Rmeas | 0.044 | 0.036 | 0.186 |
Total number of observations | 335039 | ||
Number of reflections | 46061 | 603 | 3099 |
<I/σ(I)> | 26.27 | 41.71 | 9.8 |
Completeness [%] | 97.1 | 96.9 | 90.2 |
Redundancy | 7.274 | 6.39 | 6.863 |
CC(1/2) | 0.999 | 0.997 | 0.983 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0.2 M Ammonium sulfate, 0.1 M Tris pH 8.5, 25% w/v Polyethylene glycol 3,350 |