7MLR
X-ray crystal structure of human BRD4(D1) in complex with 2-(4-{5-[6-(3,5-dimethylphenoxy)pyridin-2-yl]-4-methyl-1H-1,2,3-triazol-1- yl}piperidin-1-yl)-N,N-dimethylethan-1-amine (DW34)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-12-03 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.979 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 37.098, 44.336, 78.936 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.660 - 1.200 |
R-factor | 0.137 |
Rwork | 0.136 |
R-free | 0.16430 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 6wgx |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 44.340 | 44.340 | 1.220 |
High resolution limit [Å] | 1.200 | 6.570 | 1.200 |
Rmerge | 0.054 | 0.045 | 0.555 |
Rmeas | 0.062 | 0.053 | 0.674 |
Rpim | 0.030 | 0.027 | 0.375 |
Total number of observations | 1006 | 5459 | |
Number of reflections | 77580 | 283 | 1837 |
<I/σ(I)> | 12.5 | 26.2 | 1.6 |
Completeness [%] | 97.9 | 93.8 | 93.1 |
Redundancy | 3.7 | 3.6 | 3 |
CC(1/2) | 0.997 | 0.994 | 0.680 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | NaI, pH 8.5, Bis-Tris propane, 20% (v/v) PEG 3350, ethylene glycol |