7MGS
SARS-CoV-2 main protease in complex with N-terminal autoprocessing substrate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2020-11-24 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 45.771, 63.312, 104.646 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 104.650 - 1.840 |
R-factor | 0.1962 |
Rwork | 0.193 |
R-free | 0.22730 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6y2e |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.18.2) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 104.650 | 104.650 | 1.880 |
High resolution limit [Å] | 1.840 | 9.010 | 1.840 |
Rmerge | 0.063 | 0.033 | 0.825 |
Rmeas | 0.077 | 0.042 | 1.012 |
Rpim | 0.044 | 0.025 | 0.575 |
Total number of observations | 65157 | 574 | 3979 |
Number of reflections | 24921 | 224 | 1518 |
<I/σ(I)> | 9.8 | 28.2 | 1 |
Completeness [%] | 92.5 | 82.3 | 93.2 |
Redundancy | 2.6 | 2.6 | 2.6 |
CC(1/2) | 0.996 | 0.993 | 0.538 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 291.15 | 9% Polyethylene Glycol (PEG) 6000; 0.1 M MES, pH 6.5 |