7ME4
Structure of the extracellular WNT-binding module in Drosophila Ror2/Nrk
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2012-12-19 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9790 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 95.704, 74.695, 61.552 |
Unit cell angles | 90.00, 106.31, 90.00 |
Refinement procedure
Resolution | 42.500 - 1.750 |
R-factor | 0.1892 |
Rwork | 0.187 |
R-free | 0.22300 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3HKL 1I71 |
RMSD bond length | 0.013 |
RMSD bond angle | 1.202 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER |
Refinement software | PHENIX (dev_3915) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 59.074 | 42.501 | 1.840 |
High resolution limit [Å] | 1.750 | 5.530 | 1.750 |
Rmerge | 0.029 | 0.744 | |
Rmeas | 0.059 | 0.037 | 1.010 |
Rpim | 0.036 | 0.023 | 0.678 |
Total number of observations | 81880 | 2830 | 8391 |
Number of reflections | 36932 | 1141 | 4747 |
<I/σ(I)> | 9.1 | 26.3 | 1 |
Completeness [%] | 88.5 | 85.4 | 78 |
Redundancy | 2.2 | 2.5 | 1.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5 | 294.15 | 3 mg/ml protein, 50 mM Bis-Tris propane (pH 5.0), 21% PEG 3350 |