7MBG
SARS-CoV-2 Main protease in orthorhombic space group
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-02-19 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9120 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 67.250, 98.160, 102.260 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 56.190 - 1.860 |
R-factor | 0.1963 |
Rwork | 0.195 |
R-free | 0.22210 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5rgq |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 67.250 | 67.250 | 1.910 |
High resolution limit [Å] | 1.860 | 8.320 | 1.860 |
Rmerge | 0.176 | 0.042 | 3.084 |
Rmeas | 0.191 | 0.046 | 3.341 |
Rpim | 0.074 | 0.018 | 1.278 |
Total number of observations | 376849 | 4659 | 27709 |
Number of reflections | 57312 | 744 | 4147 |
<I/σ(I)> | 7.2 | 28.7 | 0.7 |
Completeness [%] | 99.6 | 99.7 | 99.2 |
Redundancy | 6.6 | 6.3 | 6.7 |
CC(1/2) | 0.996 | 0.998 | 0.314 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 293 | 0.1 M MES, pH 6.7, 5% v/v DMSO, 8% w/v PEG4000, 30% w/v PEG400 |