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7M6D

Structure of the SARS-CoV-2 RBD in complex with neutralizing antibodies BG4-25 and CR3022

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL12-2
Synchrotron siteSSRL
BeamlineBL12-2
Temperature [K]100
Detector technologyPIXEL
Collection date2020-11-20
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.97946
Spacegroup nameP 21 21 21
Unit cell lengths56.023, 104.324, 268.784
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution38.790 - 3.100
R-factor0.2211
Rwork0.218
R-free0.25910
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6w41
RMSD bond length0.012
RMSD bond angle1.597
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.19.1_4122)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]38.7903.160
High resolution limit [Å]3.0003.000
Rmerge0.2711.350
Rpim0.1250.886
Number of reflections319034079
<I/σ(I)>4
Completeness [%]97.988.1
Redundancy6.1
CC(1/2)0.9720.259
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP52980.05 M citric acid, 0.05 M BIS-TRIS propane pH 5.0, 16% polyethylene glycol 3350

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PDB entries from 2025-06-11

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