7M6D
Structure of the SARS-CoV-2 RBD in complex with neutralizing antibodies BG4-25 and CR3022
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-11-20 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97946 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 56.023, 104.324, 268.784 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.790 - 3.100 |
R-factor | 0.2211 |
Rwork | 0.218 |
R-free | 0.25910 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6w41 |
RMSD bond length | 0.012 |
RMSD bond angle | 1.597 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.1_4122) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 38.790 | 3.160 |
High resolution limit [Å] | 3.000 | 3.000 |
Rmerge | 0.271 | 1.350 |
Rpim | 0.125 | 0.886 |
Number of reflections | 31903 | 4079 |
<I/σ(I)> | 4 | |
Completeness [%] | 97.9 | 88.1 |
Redundancy | 6.1 | |
CC(1/2) | 0.972 | 0.259 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 298 | 0.05 M citric acid, 0.05 M BIS-TRIS propane pH 5.0, 16% polyethylene glycol 3350 |