7LR6
Crystal structure of GH5_18-E140A from Bifidobacterium longum subsp. longum ATCC 55813 in complex with Manb1-4GlcNAc
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-05-06 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.36242 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 105.257, 142.989, 157.444 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.360 - 2.300 |
R-factor | 0.1631 |
Rwork | 0.161 |
R-free | 0.20590 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7lr1 |
RMSD bond length | 0.008 |
RMSD bond angle | 0.886 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.360 | 2.340 |
High resolution limit [Å] | 2.300 | 2.300 |
Number of reflections | 105883 | 5206 |
<I/σ(I)> | 9.1 | |
Completeness [%] | 99.9 | |
Redundancy | 13 | |
CC(1/2) | 0.996 | 0.533 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 292 | 16% PEG 2K, 0.2 M ammonium sulfate, 0.1 M sodium citrate pH 5.6 |