7LEL
Crystal structure of the second bromodomain (BD2) of human BRDT bound to Bromosporine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-BM |
Synchrotron site | APS |
Beamline | 22-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-04-21 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.9700 |
Spacegroup name | P 1 |
Unit cell lengths | 45.990, 58.460, 60.770 |
Unit cell angles | 72.58, 71.28, 70.62 |
Refinement procedure
Resolution | 56.199 - 2.150 |
R-factor | 0.1851 |
Rwork | 0.183 |
R-free | 0.23240 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5vbq |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 56.199 | 56.199 | 2.210 |
High resolution limit [Å] | 2.150 | 9.620 | 2.150 |
Rmerge | 0.085 | 0.029 | 0.585 |
Rmeas | 0.099 | 0.034 | 0.679 |
Total number of observations | 110378 | ||
Number of reflections | 28678 | 300 | 2071 |
<I/σ(I)> | 11.77 | 31.21 | 2.74 |
Completeness [%] | 95.3 | 88.8 | 92.7 |
Redundancy | 3.849 | 3.523 | 3.87 |
CC(1/2) | 0.997 | 0.998 | 0.828 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.05 M CaCl2, 2H2O, 0.1 M Bis-tris (pH 6.5), and 30 % v/v PEG MME 550 |