7L9J
Crystal structure of the second bromodomain (BD2) of human BRD2 bound to Ro3280
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-02-13 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.000 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 52.330, 72.148, 31.938 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.361 - 1.850 |
R-factor | 0.1641 |
Rwork | 0.162 |
R-free | 0.20630 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7l9g |
Data reduction software | XDS |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.880 |
High resolution limit [Å] | 1.850 | 5.020 | 1.850 |
Rmerge | 0.066 | 0.041 | 0.258 |
Rmeas | 0.073 | 0.045 | 0.289 |
Rpim | 0.030 | 0.020 | 0.127 |
Total number of observations | 62931 | ||
Number of reflections | 10855 | 624 | 520 |
<I/σ(I)> | 10.4 | ||
Completeness [%] | 99.8 | 99.7 | 96.8 |
Redundancy | 5.8 | 5.2 | 4.8 |
CC(1/2) | 0.998 | 0.944 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2 M Ammonium acetate, 0.1 M BIS-TRIS pH 5.5, 25 % w/v Polyethylene glycol 3,350 |