7L07
Last common ancestor of HMPPK and PLK/HMPPK vitamin kinases
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | LNLS BEAMLINE W01B-MX2 |
Synchrotron site | LNLS |
Beamline | W01B-MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-06-12 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.45854 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 65.644, 65.644, 243.726 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 46.580 - 2.000 |
R-factor | 0.2079 |
Rwork | 0.207 |
R-free | 0.21520 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4c5k |
RMSD bond length | 0.007 |
RMSD bond angle | 1.017 |
Data reduction software | XDS (1.0) |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.580 | 2.072 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.145 | 1.070 |
Rmeas | 0.152 | |
Rpim | 0.046 | 0.352 |
Number of reflections | 22065 | 2142 |
<I/σ(I)> | 13.52 | 2.06 |
Completeness [%] | 99.9 | 99.86 |
Redundancy | 10.9 | 10 |
CC(1/2) | 0.998 | 0.793 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | Protein: 20 mM tris 7.8, 10 mM MgCl, 10 mM ADP, 1 mM AlCl3 and 30 mM NaF. Crystalization condition: 0.2 M Magnesium chloride hexahydrate, 0.1 M Tris pH 7.0 and 10% w/v PEG 8000 |