7KYV
Crystal structure of Plasmodium falciparum dihydroorotate dehydrogenase bound with Inhibitor DSM634 (3-methyl-N-(1-(5-methylisoxazol-3-yl)ethyl)-4-(4-(trifluoromethyl)benzyl)-1H-pyrrole-2-carboxamide)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-06-15 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97943 |
Spacegroup name | P 64 |
Unit cell lengths | 85.288, 85.288, 139.216 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 42.640 - 2.400 |
R-factor | 0.1823 |
Rwork | 0.180 |
R-free | 0.19930 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3i65 |
RMSD bond length | 0.007 |
RMSD bond angle | 0.716 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.640 | 2.440 |
High resolution limit [Å] | 2.400 | 2.400 |
Rpim | 0.017 | 0.721 |
Number of reflections | 22433 | 1121 |
<I/σ(I)> | 46.22 | 1.1 |
Completeness [%] | 100.0 | 100 |
Redundancy | 9.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.1 | 293 | 0.16 M AmSO4, 18% v/v PEG4000, 100 mM Sodium acetate pH 5.1, 24% v/v Glycerol |