7KNY
The crystal structure of the I38T mutant PA endonuclease (2009/H1N1/California) in complex with SJ000988528
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.1 |
Synchrotron site | ALS |
Beamline | 8.2.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-09-13 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.00 |
Spacegroup name | I 4 2 2 |
Unit cell lengths | 89.541, 89.541, 132.914 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.840 - 2.480 |
R-factor | 0.2139 |
Rwork | 0.211 |
R-free | 0.26780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5vpt |
RMSD bond length | 0.003 |
RMSD bond angle | 0.620 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | PHENIX (dev_3965) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.840 | 2.580 |
High resolution limit [Å] | 2.480 | 2.480 |
Rmerge | 0.064 | 1.105 |
Rmeas | 0.070 | 1.192 |
Rpim | 0.026 | 0.440 |
Number of reflections | 9611 | 1071 |
<I/σ(I)> | 20.6 | 2 |
Completeness [%] | 97.7 | 98.6 |
Redundancy | 6.9 | 6.9 |
CC(1/2) | 0.999 | 0.747 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0.1 M HEPES PH 7.8, 1 M AMMONIUM SULFATE, 10 MM MNCL2, 10 MM MGCL2, 0.5% PVP K15 |