7KLW
Crystal structure of synthetic nanobody (Sb45+Sb68) complexes with SARS-CoV-2 receptor binding domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-10-23 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0000 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 74.497, 102.403, 138.977 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.220 - 2.600 |
R-factor | 0.21 |
Rwork | 0.206 |
R-free | 0.25480 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7kgj |
RMSD bond length | 0.004 |
RMSD bond angle | 0.691 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 41.220 | 2.690 |
High resolution limit [Å] | 2.600 | 2.600 |
Rmerge | 0.095 | 0.739 |
Rpim | 0.038 | 0.287 |
Number of reflections | 16508 | 1627 |
<I/σ(I)> | 13.1 | 2.1 |
Completeness [%] | 98.8 | 98.7 |
Redundancy | 7.2 | 7.4 |
CC(1/2) | 0.998 | 0.895 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293 | 10% PEG 8000, 0.1M Sodium Cacodylate pH 6.0 |