7KJA
Crystal structure of the EphA2 intracellular KD-SAM domains
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2014-11-21 |
Detector | RIGAKU RAXIS HTC |
Wavelength(s) | 1.5418 |
Spacegroup name | I 1 2 1 |
Unit cell lengths | 123.060, 55.030, 135.644 |
Unit cell angles | 90.00, 94.86, 90.00 |
Refinement procedure
Resolution | 20.490 - 1.750 |
R-factor | 0.1898 |
Rwork | 0.188 |
R-free | 0.21750 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4pdo 3kka |
RMSD bond length | 0.004 |
RMSD bond angle | 0.715 |
Data reduction software | MOSFLM (version 7.1.0) |
Data scaling software | Aimless (version 0.3.11) |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.490 | 1.780 |
High resolution limit [Å] | 1.750 | 1.750 |
Rmerge | 0.059 | 0.690 |
Rmeas | 0.081 | 0.953 |
Rpim | 0.056 | 0.654 |
Number of reflections | 91439 | 4522 |
<I/σ(I)> | 13.4 | 1.4 |
Completeness [%] | 99.9 | 100 |
Redundancy | 3.6 | 3.5 |
CC(1/2) | 0.997 | 0.599 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 287 | 0.2 M MgCl2, 0.1 M Bis-Tris pH5.5, 25% PEG 3350 |